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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
22
DNA binding
9
Transcription
5
3D chromatin structure
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
9
October, 2019
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
23
bam
10
tsv
3
bigWig
3
hic
2
bed bed3+
2
bedpe bed3+
2
hdf5
2
tagAlign
1
fastq
Organism
38
Homo sapiens
Biosample type
28
tissue
8
primary cell
2
cell line
Organ
225
liver
196
pancreas
154
epithelium
140
kidney
127
heart
89
bone element
70
connective tissue
57
brain
44
adipose tissue
40
vasculature
38
blood vessel
29
musculature of body
27
eye
26
limb
13
artery
nerve
10
lung
9
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
96
hg19
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA accessibility
assembly!
GRCh38
organ_slims!
nerve
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
3
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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