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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
12
total RNA-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
47
DNA binding
12
Transcription
3
3D chromatin structure
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
7
October, 2019
5
July, 2019
3
March, 2020
3
May, 2019
Available data
36
tagAlign
27
bam
15
tsv
7
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bed narrowPeak
Organism
67
Homo sapiens
Biosample type
60
tissue
7
primary cell
Organ
239
liver
205
pancreas
158
epithelium
140
kidney
127
heart
98
connective tissue
89
bone element
66
brain
64
adipose tissue
44
vasculature
42
blood vessel
41
musculature of body
27
eye
26
limb
13
artery
12
nerve
10
lung
9
spleen
9
vein
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
67
AMP
Genome assembly (visualization)
GRCh38
140
hg19
Lab
67
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assembly!
GRCh38
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
tissue
brain
9
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 20 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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