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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
203
DNA binding
24
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
85
October, 2019
79
November, 2017
28
May, 2019
16
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
Available data
208
bam
187
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
234
Homo sapiens
Biosample type
224
tissue
10
primary cell
Organ
760
pancreas
704
liver
649
connective tissue
482
adipose tissue
394
epithelium
316
heart
234
brain
191
kidney
172
vasculature
170
blood vessel
147
bone element
92
artery
78
limb
60
blood
60
bodily fluid
48
musculature of body
40
nerve
36
embryo
29
eye
23
spleen
17
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
234
AMP
Genome assembly (visualization)
169
GRCh38
125
hg19
Lab
234
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_slims!
DNA accessibility
assembly!
hg18
files.file_type!
bed broadPeak
month_released!
June, 2018
BIOSAMPLE
ASSAY
234 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
layer of hippocampus
23
brain
17
1
1
temporal lobe
15
1
1
substantia nigra
15
1
angular gyrus
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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