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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
Assay category
340
DNA binding
4
Transcription
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
76
control
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
666
February, 2021
400
August, 2017
365
May, 2021
340
November, 2017
274
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
62
November, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
330
bam
272
bigWig
258
fastq
247
bed narrowPeak
246
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
4
tsv
3
tar
Organism
354
Homo sapiens
Biosample type
255
cell line
86
tissue
13
primary cell
Organ
249
liver
91
brain
12
epithelium
10
pancreas
6
vasculature
4
connective tissue
3
blood vessel
Project
354
AMP
Genome assembly (visualization)
220
hg19
218
GRCh38
Lab
344
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
assembly!
hg18
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
354 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
cell line
HepG2
249
EndoC_BH1
6
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
osteoblast
4
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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