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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
7
ChIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
113
Transcription
DNA accessibility
7
DNA binding
Target of assay
6
control
1
RNA binding protein
1
transcription factor
Date released
57
August, 2021
47
September, 2023
8
February, 2021
5
April, 2019
3
December, 2019
3
May, 2023
2
October, 2019
Available data
62
txt
10
tsv
7
bam
5
csv
Organism
125
Homo sapiens
Biosample type
125
tissue
7
cell line
3
primary cell
Organ
163
heart
125
kidney
108
brain
92
liver
88
bone element
65
connective tissue
64
adipose tissue
63
pancreas
28
blood vessel
28
vasculature
26
limb
25
eye
21
musculature of body
12
nerve
11
artery
11
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
47
KPMP
Genome assembly (visualization)
hg19
22
GRCh38
Lab
60
Katalin Susztak, Upenn
47
KPMP
18
AMP-T2D consortium
Audit category:
7
audit script error
assay_slims!
DNA accessibility
assembly!
hg19
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
125 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
tissue
kidney
64
49
7
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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