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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
47
WGBS
16
pCHi-C
1
Hi-C
Assay category
177
Transcription
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Date released
76
February, 2023
74
May, 2022
56
September, 2020
18
February, 2021
16
May, 2021
1
March, 2023
Available data
132
fastq
93
zippedFastqFolder
6
tsv
1
hic
Organism
241
Homo sapiens
Biosample type
241
primary cell
155
tissue
42
in vitro differentiated cells
32
cell line
2
stem cell
Organ
100
epithelium
100
pancreas
1
bone element
1
bone marrow
1
connective tissue
Project
224
HPAP
16
T1D
1
ITG
Genome assembly (visualization)
hg19
181
GRCh38
Lab
224
Klaus Kaestner, Upenn
AMP-T2D consortium
16
Kyle Gaulton, UCSD
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
assembly!
hg19
lab.title!
AMP-T2D consortium
organ_slims!
heart
BIOSAMPLE
ASSAY
241 results
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total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
CD4-positive, alpha-beta T cell
2
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