Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
49
total RNA-seq
6
pCHi-C
5
WGBS
2
STARR-seq
1
Hi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
126
DNA binding
50
Transcription
5
DNA methylation
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
95
control
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
33
August, 2017
24
May, 2020
20
May, 2022
20
October, 2019
17
August, 2021
13
December, 2017
4
February, 2023
4
November, 2018
2
February, 2020
1
December, 2018
1
February, 2021
1
July, 2019
1
June, 2019
1
March, 2020
Available data
97
bam
75
fastq
44
tagAlign
17
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
1
vcf
Organism
191
Homo sapiens
Biosample type
117
tissue
71
cell line
2
primary cell
1
in vitro differentiated cells
Organ
167
heart
165
liver
135
kidney
109
brain
94
connective tissue
94
pancreas
89
bone element
65
adipose tissue
40
epithelium
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
191
AMP
Genome assembly (visualization)
hg19
525
GRCh38
Lab
155
AMP-T2D consortium
20
Karen Mohlke, UNC
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assembly!
hg19
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
191 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
WGBS
STARR-seq
Hi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
62
20
1
3
1
islet of Langerhans
2
14
4
right lobe of liver
3
1
1
retina
3
pigmented layer of retina
2
cell line
HepG2
56
9
1
1
2
1
1
primary cell
hepatocyte
1
retinal pigment epithelial cell
1
in vitro differentiated cells
hepatocyte
1
Download