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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
12
total RNA-seq
2
pCHi-C
Assay category
95
DNA binding
DNA accessibility
12
Transcription
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
control
25
narrow histone mark
Date released
76
November, 2017
12
February, 2020
9
October, 2017
7
October, 2019
3
May, 2019
2
March, 2020
Available data
76
bam
75
tagAlign
52
bed narrowPeak
52
bigBed narrowPeak
51
bigWig
14
tsv
3
fastq
Organism
109
Homo sapiens
Biosample type
109
tissue
Organ
129
liver
127
heart
109
brain
93
connective tissue
88
bone element
70
pancreas
65
adipose tissue
35
blood vessel
35
vasculature
34
epithelium
26
eye
26
kidney
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
109
AMP
Genome assembly (visualization)
183
GRCh38
hg19
Lab
109
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assembly!
hg19
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
total RNA-seq
pCHi-C
tissue
layer of hippocampus
22
caudate nucleus
14
1
substantia nigra
14
1
cingulate gyrus
12
middle frontal area 46
12
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