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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
17
ChIP-seq
Assay category
DNA accessibility
60
Transcription
41
DNA methylation
17
DNA binding
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
189
August, 2021
134
August, 2017
125
November, 2017
114
February, 2021
101
May, 2022
100
February, 2023
82
October, 2019
May, 2021
56
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
29
October, 2018
26
May, 2020
25
February, 2020
23
May, 2019
17
December, 2017
17
November, 2018
16
July, 2019
15
April, 2019
10
November, 2020
9
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
May, 2023
2
November, 2019
1
August, 2018
1
October, 2022
1
September, 2018
Available data
74
zippedFastqFolder
23
bam
23
fastq
6
txt
Organism
118
Homo sapiens
Biosample type
74
primary cell
39
tissue
5
in vitro differentiated cells
Organ
47
pancreas
44
epithelium
33
liver
4
embryo
1
musculature of body
Project
74
HPAP
44
AMP
Genome assembly (visualization)
77
GRCh38
hg19
Lab
74
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assembly!
hg19
month_released!
May, 2021
BIOSAMPLE
ASSAY
118 results
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Clear Filters
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
33
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
liver
20
9
islet of Langerhans
6
right lobe of liver
3
skeletal muscle tissue
1
in vitro differentiated cells
Hepatic endoderm
2
pancreatic endoderm
2
hepatocyte
1
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