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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
17
ChIP-seq
16
total RNA-seq
Assay category
56
Transcription
17
DNA binding
DNA accessibility
Target of assay
16
control
1
histone
1
histone modification
1
narrow histone mark
Date released
189
August, 2021
134
August, 2017
125
November, 2017
114
February, 2021
101
May, 2022
100
February, 2023
82
October, 2019
May, 2021
56
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
29
October, 2018
26
May, 2020
25
February, 2020
23
May, 2019
17
December, 2017
17
November, 2018
16
July, 2019
15
April, 2019
10
November, 2020
9
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
3
May, 2023
2
November, 2019
1
August, 2018
1
October, 2022
1
September, 2018
Available data
55
fastq
19
zippedFastqFolder
17
bam
Organism
73
Homo sapiens
Biosample type
56
primary cell
12
tissue
5
in vitro differentiated cells
Organ
19
epithelium
16
pancreas
13
liver
4
embryo
Project
56
HPAP
17
AMP
Genome assembly (visualization)
77
GRCh38
hg19
Lab
56
Klaus Kaestner, Upenn
17
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
DNA accessibility
assembly!
hg19
month_released!
May, 2021
BIOSAMPLE
ASSAY
73 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
tissue
liver
9
right lobe of liver
3
in vitro differentiated cells
Hepatic endoderm
2
pancreatic endoderm
2
hepatocyte
1
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