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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
single cell RNA-seq
49
total RNA-seq
13
ChIP-seq
3
pCHi-C
3
snDrop-seq
2
RNA microarray
2
STARR-seq
Assay category
122
Transcription
DNA accessibility
13
DNA binding
Target of assay
12
control
1
RNA binding protein
1
transcription factor
Date released
59
August, 2021
47
September, 2023
9
April, 2020
8
February, 2021
6
October, 2019
5
April, 2019
3
December, 2019
3
March, 2020
3
May, 2023
1
June, 2019
1
May, 2019
Available data
62
txt
13
bam
13
tsv
5
csv
Organism
145
Homo sapiens
Biosample type
135
tissue
7
cell line
3
primary cell
Organ
194
pancreas
167
heart
165
liver
140
epithelium
135
kidney
109
brain
94
connective tissue
89
bone element
65
adipose tissue
35
blood vessel
35
vasculature
26
eye
26
limb
23
musculature of body
13
artery
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
89
AMP
47
KPMP
9
LungMap
Genome assembly (visualization)
hg19
51
GRCh38
Lab
60
Katalin Susztak, Upenn
47
KPMP
27
AMP-T2D consortium
9
Xin Sun, UCSD
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
assay_slims!
DNA accessibility
assembly!
hg19
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
145 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
pCHi-C
snDrop-seq
RNA microarray
STARR-seq
tissue
kidney
64
49
7
lung
9
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
2
kidney epithelial cell
1
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