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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 87RNA microarray
  • 75WGBS
  • 53pCHi-C
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 566DNA binding
  • 515Transcription
  • DNA accessibility
  • 78DNA methylation
  • 73D chromatin structure
  • 1DNA sequencing
Target of assay
  • 311control
  • 233histone
  • 233histone modification
  • 130broad histone mark
  • 103narrow histone mark
  • 27transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 4recombinant protein
Date released
  • 189August, 2021
  • 134August, 2017
  • 125November, 2017
  • 114February, 2021
  • 101May, 2022
  • 100February, 2023
  • 82October, 2019
  • 67May, 2021
  • 56September, 2020
  • 47September, 2023
  • 40May, 2024
  • 32March, 2020
  • 29October, 2018
  • 26May, 2020
  • 25February, 2020
  • 23May, 2019
  • 17December, 2017
  • 17November, 2018
  • 16July, 2019
  • 15April, 2019
  • 10November, 2020
  • 9April, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 5December, 2018
  • 5December, 2019
  • 5January, 2018
  • 5March, 2023
  • 4January, 2019
  • 4July, 2018
  • 4September, 2017
  • 3May, 2023
  • 2November, 2019
  • 1August, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 368bam
  • 311fastq
  • 186tsv
  • 160tagAlign
  • 157txt
  • 118bigWig
  • 97bed narrowPeak
  • 93zippedFastqFolder
  • 56bigBed narrowPeak
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 8csv
  • 2bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 1331Homo sapiens
Biosample type
  • 840tissue
  • 279primary cell
  • 116cell line
  • 97in vitro differentiated cells
  • 7stem cell
Organ
  • 194pancreas
  • 167heart
  • 165liver
  • 140epithelium
  • 135kidney
  • 109brain
  • 94connective tissue
  • 89bone element
  • 65adipose tissue
  • 35blood vessel
  • 35vasculature
  • 26eye
  • 26limb
  • 23musculature of body
  • 13artery
  • 12nerve
  • 11spleen
  • 10lung
  • 8embryo
  • 6blood
  • 6bodily fluid
  • 5gonad
  • 5ovary
  • 5vein
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1025AMP
  • 224HPAP
  • 47KPMP
  • 29T1D
  • 9LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2686GRCh38
  • 5hg18
Lab
  • 827AMP-T2D consortium
  • 224Klaus Kaestner, Upenn
  • 76Kyle Gaulton, UCSD
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 40Patrick T. Ellinor, Broad
  • 21Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 1ITG
Audit category:
  • 117inconsistent ontology term
  • 9audit script error
Audit category:
  • 3missing controlled_by
assay_slims!
  • DNA accessibility
assembly!
  • hg19
BIOSAMPLE
ASSAY

1339 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
WGBS
pCHi-C
MeRIP-seq
Hi-C
GRO-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
Capture-C
HiChIP
RRBS
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
DNAme array
MPRA
...and 3 more
tissue
kidney76449
liver6212031
bone element84
islet of Langerhans4032441
left cardiac atrium4018
primary cell
Langerhans cell85
pancreatic alpha cell64231
exocrine cell39
pancreatic beta cell61116
endothelial cell of umbilical vein5
cell line
HepG25691112
EndoC_BH1263221
Panc17
GM128786
EndoC-BH1
in vitro differentiated cells
embryonic stem cell3851
adipocyte191
neural progenitor cell9
pancreatic endoderm51
cardiomyocytes (cardiac muscle cell)21
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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