Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
104
total RNA-seq
1
Hi-C
1
WGBS
Assay category
346
DNA binding
104
Transcription
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
309
transcription factor
88
recombinant protein
58
RNA binding protein
32
histone
32
histone modification
28
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
18
October, 2019
12
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
452
bigWig
451
bam
346
bed narrowPeak
321
bigBed narrowPeak
321
fastq
104
tsv
44
bed broadPeak
44
bigBed broadPeak
14
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
452
Homo sapiens
Biosample type
1524
tissue
460
primary cell
452
cell line
in vitro differentiated cells
3
stem cell
Organ
267
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
53
pancreas
47
epithelium
11
kidney
8
embryo
Project
448
AMP
4
T1D
Genome assembly (visualization)
515
hg19
452
GRCh38
Lab
452
AMP-T2D consortium
Audit category:
56
inconsistent ontology term
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
1
inconsistent assembly
assay_slims!
DNA accessibility
biosample_type!
in vitro differentiated cells
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
452 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
261
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
EndoC_BH1
13
33
H1-hESC
8
+ See 7 more…
See all biosamples
Download