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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
105
ChIP-seq
Assay category
121
Transcription
105
DNA binding
DNA accessibility
Target of assay
67
histone
67
histone modification
34
transcription factor
33
broad histone mark
33
narrow histone mark
6
RNA binding protein
4
control
3
chromatin remodeller
Date released
82
May, 2021
48
August, 2017
29
December, 2017
22
February, 2021
21
February, 2018
20
August, 2021
2
March, 2020
2
October, 2019
Available data
226
bam
222
bigWig
121
tsv
98
fastq
96
bed narrowPeak
18
tagAlign
16
bed bed3+
14
bigBed narrowPeak
Organism
226
Homo sapiens
Biosample type
1524
tissue
460
primary cell
444
cell line
226
in vitro differentiated cells
3
stem cell
Organ
53
connective tissue
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
226
AMP
Genome assembly (visualization)
233
hg19
226
GRCh38
3
hg18
Lab
226
AMP-T2D consortium
Audit category:
88
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
assay_slims!
DNA accessibility
organ_slims!
embryo
BIOSAMPLE
ASSAY
226 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
hepatocyte
14
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