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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
115
ChIP-seq
Assay category
127
Transcription
115
DNA binding
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
37
transcription factor
6
RNA binding protein
control
3
chromatin remodeller
Date released
84
May, 2021
47
August, 2017
34
December, 2017
31
February, 2018
22
February, 2021
20
August, 2021
2
March, 2020
2
October, 2019
Available data
242
bam
242
bigWig
127
tsv
112
fastq
110
bed narrowPeak
18
tagAlign
14
bed bed3+
14
bigBed narrowPeak
Organism
242
Homo sapiens
Biosample type
1521
tissue
457
primary cell
452
cell line
242
in vitro differentiated cells
2
stem cell
Organ
52
connective tissue
20
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
242
AMP
Genome assembly (visualization)
249
hg19
242
GRCh38
4
hg18
Lab
242
AMP-T2D consortium
Audit category:
92
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
target.investigated_as!
control
BIOSAMPLE
ASSAY
242 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
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