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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ChIP-seq
149
total RNA-seq
100
single cell RNA-seq
1
Hi-C
1
small RNA-seq
Assay category
250
Transcription
199
DNA binding
DNA accessibility
1
3D chromatin structure
Target of assay
190
histone
190
histone modification
98
narrow histone mark
92
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
39
August, 2017
18
October, 2019
16
July, 2019
15
June, 2019
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
1
March, 2023
Available data
449
bam
449
bigWig
250
tsv
197
fastq
187
bed narrowPeak
98
tagAlign
48
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
1
hic
Organism
450
Homo sapiens
Biosample type
1514
tissue
cell line
450
primary cell
247
in vitro differentiated cells
3
stem cell
Organ
176
epithelium
160
pancreas
24
connective tissue
18
kidney
16
vasculature
14
blood vessel
musculature of body
10
vein
9
brain
8
liver
7
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
269
AMP
180
T1D
1
ITG
Genome assembly (visualization)
510
hg19
450
GRCh38
Lab
269
AMP-T2D consortium
180
Kyle Gaulton, UCSD
1
ITG
Audit category:
24
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
biosample_type!
cell line
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
450 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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