Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
146
total RNA-seq
100
single cell RNA-seq
2
small RNA-seq
1
Hi-C
Assay category
248
Transcription
207
DNA binding
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
39
August, 2017
23
June, 2019
18
July, 2019
18
October, 2019
6
November, 2017
5
December, 2019
4
May, 2019
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
1
March, 2023
Available data
455
bam
455
bigWig
248
tsv
197
fastq
195
bed narrowPeak
98
tagAlign
56
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
1
hic
Organism
456
Homo sapiens
Biosample type
1524
tissue
456
primary cell
452
cell line
247
in vitro differentiated cells
3
stem cell
Organ
176
epithelium
160
pancreas
20
connective tissue
18
kidney
16
vasculature
14
blood vessel
10
musculature of body
10
vein
9
brain
8
liver
7
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
275
AMP
180
T1D
1
ITG
Genome assembly (visualization)
517
hg19
456
GRCh38
Lab
275
AMP-T2D consortium
180
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
files.file_type!
ibed
month_released!
November, 2020
BIOSAMPLE
ASSAY
456 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
+ See 67 more…
See all biosamples
Download