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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
DNA accessibility
9
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
7
control
2
histone
2
histone modification
2
narrow histone mark
Date released
5
December, 2017
August, 2017
2
October, 2019
2
September, 2017
1
March, 2023
1
May, 2023
Available data
bigWig
2399
bam
1311
tsv
bed narrowPeak
736
bigBed narrowPeak
656
fastq
229
tagAlign
58
bed broadPeak
50
bigBed broadPeak
21
bed bed3+
15
bed bedMethyl
15
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign bed3+
Organism
11
Homo sapiens
Biosample type
5
tissue
4
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
2
brain
2
pancreas
1
adipose tissue
1
connective tissue
1
embryo
Project
10
AMP
1
ITG
Genome assembly (visualization)
53
hg19
11
GRCh38
Lab
10
AMP-T2D consortium
1
ITG
assay_slims!
DNA accessibility
files.file_type!
bed narrowPeak
bigWig
month_released!
August, 2017
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
Hi-C
total RNA-seq
tissue
islet of Langerhans
2
adipose tissue
1
dorsal plus ventral thalamus
1
planum polare
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
chondrocytes
1
stem cell
hESC
1
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