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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
48
ChIP-seq
2
WGBS
Assay category
89
Transcription
48
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
550
February, 2021
207
November, 2017
188
May, 2020
177
May, 2021
164
July, 2018
139
August, 2017
73
July, 2019
70
November, 2018
49
April, 2018
47
December, 2017
30
December, 2018
26
September, 2018
24
October, 2019
21
November, 2019
January, 2019
17
October, 2018
15
August, 2021
15
February, 2018
13
March, 2020
5
April, 2019
5
December, 2019
5
May, 2019
5
May, 2024
4
June, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
September, 2017
1
March, 2023
1
May, 2023
Available data
139
bam
139
fastq
137
bigWig
89
tsv
23
bed narrowPeak
21
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
139
Homo sapiens
Biosample type
115
tissue
23
in vitro differentiated cells
1
primary cell
Organ
96
pancreas
37
connective tissue
14
adipose tissue
5
liver
Project
139
AMP
Genome assembly (visualization)
143
hg19
139
GRCh38
Lab
139
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
January, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
139 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
tissue
islet of Langerhans
89
7
white adipose tissue
12
liver
5
adipose tissue
2
in vitro differentiated cells
adipocyte
23
primary cell
skeletal muscle myoblast
1
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