Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
502
ChIP-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
Assay category
918
Transcription
502
DNA binding
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
429
histone modification
428
histone
233
narrow histone mark
195
broad histone mark
70
transcription factor
21
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
170
May, 2020
154
August, 2017
154
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
53
July, 2019
45
October, 2018
38
May, 2021
36
December, 2017
20
November, 2019
16
March, 2020
7
November, 2018
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
October, 2017
2
September, 2017
1
August, 2021
1
March, 2019
1
May, 2023
Available data
1414
bigWig
1395
bam
917
tsv
497
bed narrowPeak
322
bigBed narrowPeak
230
fastq
102
tagAlign
33
bed broadPeak
14
bed bed3+
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
1
bedpe
1
tagAlign bed3+
Organism
1434
Homo sapiens
Biosample type
1440
tissue
446
cell line
444
primary cell
151
in vitro differentiated cells
3
stem cell
Organ
462
connective tissue
404
adipose tissue
350
pancreas
244
liver
119
brain
84
heart
62
blood vessel
62
vasculature
58
bone element
52
limb
28
nerve
27
musculature of body
24
kidney
21
artery
12
spleen
1
pericardium
1
pituitary gland
Project
1438
AMP
2
T1D
Genome assembly (visualization)
1497
GRCh38
1440
hg19
Lab
1438
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
27
inconsistent control
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1440 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
adipose tissue
382
1
islet of Langerhans
260
21
2
1
6
liver
147
83
1
1
1
bone tissue
58
heart left ventricle
3
29
1
1
+ See 111 more…
See all biosamples
Download