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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
429
ChIP-seq
159
total RNA-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
429
DNA binding
162
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
170
May, 2020
50
December, 2017
46
November, 2018
19
August, 2017
18
August, 2021
9
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
2
March, 2020
1
February, 2021
Available data
591
bigWig
577
bam
409
bed narrowPeak
386
fastq
348
bigBed narrowPeak
162
tsv
58
bed broadPeak
58
bigBed broadPeak
42
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
Organism
597
Homo sapiens
Biosample type
329
cell line
244
tissue
14
in vitro differentiated cells
10
primary cell
Organ
597
liver
579
pancreas
556
connective tissue
418
adipose tissue
261
epithelium
149
heart
143
vasculature
140
brain
139
blood vessel
79
artery
58
bone element
56
kidney
54
blood
54
bodily fluid
52
limb
38
musculature of body
29
embryo
28
nerve
14
vein
12
spleen
3
eye
2
pericardium
1
pituitary gland
Project
597
AMP
Genome assembly (visualization)
597
hg19
523
GRCh38
Lab
582
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent replicate
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
597 results
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ChIP-seq
total RNA-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
tissue
liver
83
147
1
1
1
right lobe of liver
7
2
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
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