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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
339
ChIP-seq
10
total RNA-seq
2
Hi-C
1
RRBS
1
pCHi-C
Assay category
339
DNA binding
10
Transcription
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
290
transcription factor
78
recombinant protein
53
RNA binding protein
33
histone
33
histone modification
21
chromatin remodeller
17
broad histone mark
16
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
42
November, 2018
18
August, 2021
14
December, 2017
5
December, 2019
5
January, 2019
2
July, 2019
1
February, 2021
Available data
350
bigWig
335
bam
327
fastq
320
bed narrowPeak
303
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tagAlign
10
tsv
5
bed bed3+
3
tar
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
Organism
353
Homo sapiens
Biosample type
329
cell line
tissue
14
in vitro differentiated cells
10
primary cell
Organ
353
liver
261
epithelium
219
pancreas
82
connective tissue
81
vasculature
77
blood vessel
65
heart
58
artery
54
blood
54
bodily fluid
32
kidney
29
embryo
16
brain
14
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
353
AMP
Genome assembly (visualization)
353
hg19
289
GRCh38
Lab
338
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
biosample_type!
tissue
month_released!
May, 2020
BIOSAMPLE
ASSAY
353 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
322
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
endothelial cell of hepatic sinusoid
1
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