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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
89
total RNA-seq
4
RRBS
Assay category
165
DNA binding
89
Transcription
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
RNA binding protein
3
chromatin remodeller
3
control
Date released
552
February, 2021
298
May, 2021
258
August, 2017
247
November, 2017
215
May, 2020
199
October, 2019
164
July, 2018
92
May, 2019
84
July, 2019
73
December, 2017
62
April, 2019
58
September, 2018
49
April, 2018
47
August, 2021
40
November, 2018
36
October, 2018
32
November, 2019
31
February, 2018
28
December, 2018
28
March, 2020
20
January, 2019
19
June, 2019
6
October, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
October, 2022
2
September, 2017
1
March, 2019
1
May, 2023
Available data
252
bigWig
238
fastq
234
bam
125
bed narrowPeak
89
tsv
38
tagAlign
37
bed broadPeak
31
bed bed3+
30
bigBed narrowPeak
11
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
252
Homo sapiens
Biosample type
174
tissue
44
in vitro differentiated cells
40
primary cell
Organ
152
pancreas
58
connective tissue
19
liver
15
musculature of body
14
adipose tissue
14
epithelium
Project
258
AMP
Genome assembly (visualization)
258
hg19
235
GRCh38
Lab
258
AMP-T2D consortium
Audit category:
38
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
tissue
islet of Langerhans
25
89
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
44
primary cell
skeletal muscle myoblast
13
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
See all biosamples
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