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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
9
single cell RNA-seq
5
ChIP-seq
5
pCHi-C
1
RRBS
Assay category
DNA accessibility
28
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
20
October, 2019
9
April, 2020
4
February, 2023
3
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
6
tsv
3
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
35
tissue
4
primary cell
Organ
762
liver
717
pancreas
627
connective tissue
460
adipose tissue
394
epithelium
316
heart
249
brain
184
kidney
177
vasculature
173
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
18
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
9
LungMap
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
30
AMP-T2D consortium
9
Xin Sun, UCSD
assay_slims!
DNA accessibility
audit.ERROR.category!
audit script error
month_released!
October, 2018
BIOSAMPLE
ASSAY
39 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
pCHi-C
RRBS
tissue
islet of Langerhans
14
2
4
lung
9
1
retina
3
pigmented layer of retina
2
primary cell
retinal pigment epithelial cell
3
1
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