Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
157
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
DNA accessibility
157
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
76
February, 2023
74
May, 2022
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
42
September, 2018
38
August, 2017
31
July, 2019
23
June, 2019
20
February, 2021
15
October, 2019
9
November, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
May, 2019
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
395
bam
387
bigWig
316
fastq
258
tsv
114
bed narrowPeak
93
zippedFastqFolder
49
tagAlign
36
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
9
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
678
Homo sapiens
Biosample type
1953
tissue
678
primary cell
611
cell line
295
in vitro differentiated cells
9
stem cell
Organ
284
epithelium
248
pancreas
27
connective tissue
21
vasculature
19
kidney
17
blood vessel
16
brain
10
heart
10
liver
10
vein
9
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
298
AMP
227
HPAP
152
T1D
1
ITG
Genome assembly (visualization)
403
hg19
364
GRCh38
Lab
283
AMP-T2D consortium
227
Klaus Kaestner, Upenn
167
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
inconsistent ontology term
4
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent control
organ_slims!
nerve
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
678 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
10
31
1
monocyte
54
41
1
1
Langerhans cell
85
pancreatic beta cell
21
12
10
16
1
exocrine cell
39
+ See 81 more…
See all biosamples
Download