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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
208
total RNA-seq
7
pCHi-C
5
WGBS
4
Hi-C
3
RRBS
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
Assay category
530
DNA binding
212
Transcription
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
312
transcription factor
109
control
106
histone modification
105
histone
82
recombinant protein
63
narrow histone mark
59
RNA binding protein
42
broad histone mark
21
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
52
August, 2017
50
November, 2018
36
December, 2017
34
August, 2021
26
October, 2019
20
May, 2022
11
July, 2019
5
December, 2019
5
January, 2019
4
February, 2023
3
June, 2019
3
March, 2020
2
February, 2020
2
February, 2021
1
December, 2018
Available data
649
bam
571
bigWig
434
fastq
388
bed narrowPeak
327
bigBed narrowPeak
179
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
vcf
Organism
763
Homo sapiens
Biosample type
399
cell line
334
tissue
15
in vitro differentiated cells
15
primary cell
Organ
773
pancreas
734
liver
650
connective tissue
483
adipose tissue
401
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
59
blood
59
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
763
AMP
Genome assembly (visualization)
573
hg19
498
GRCh38
Lab
713
AMP-T2D consortium
30
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent control
files.file_type!
vcf
BIOSAMPLE
ASSAY
763 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
STARR-seq
single cell RNA-seq
cell line
HepG2
378
14
2
1
2
2
tissue
liver
118
167
1
3
1
1
1
1
islet of Langerhans
2
14
4
right lobe of liver
10
3
1
2
retina
3
pigmented layer of retina
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
retinal pigment epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
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