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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
46
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
167
DNA binding
46
Transcription
DNA accessibility
Target of assay
96
histone
96
histone modification
49
broad histone mark
46
narrow histone mark
38
transcription factor
33
control
9
RNA binding protein
2
chromatin remodeller
Date released
62
August, 2017
55
May, 2021
39
February, 2018
30
August, 2021
23
December, 2017
4
February, 2021
4
January, 2018
2
February, 2023
1
August, 2018
1
March, 2020
Available data
154
bam
132
bigWig
115
fastq
89
bed narrowPeak
40
tsv
34
tagAlign
21
bed bed3+
1
bedpe bed3+
Organism
221
Homo sapiens
Biosample type
2189
tissue
543
cell line
431
primary cell
221
in vitro differentiated cells
9
stem cell
Organ
72
connective tissue
22
embryo
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
221
AMP
Genome assembly (visualization)
134
hg19
133
GRCh38
4
hg18
Lab
177
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
epithelium
BIOSAMPLE
ASSAY
221 results
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ChIP-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
62
5
1
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
17
4
1
definitive endodermal cell
8
2
1
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