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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
879
ChIP-seq
180
single cell RNA-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
10
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1226
Transcription
879
DNA binding
DNA accessibility
37
DNA methylation
16
3D chromatin structure
Target of assay
618
histone modification
617
histone
318
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
453
February, 2021
257
August, 2017
220
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
68
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
36
March, 2020
27
May, 2022
24
February, 2020
20
November, 2019
16
November, 2018
14
February, 2023
11
October, 2017
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1635
bam
1521
bigWig
1072
tsv
589
bed narrowPeak
374
bigBed narrowPeak
310
fastq
234
tagAlign
72
txt
33
bed broadPeak
24
bed bedMethyl
24
bigBed bedMethyl
14
bed bed3+
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2183
Homo sapiens
Biosample type
2191
tissue
716
primary cell
545
cell line
240
in vitro differentiated cells
9
stem cell
Organ
527
connective tissue
468
adipose tissue
413
pancreas
336
liver
247
heart
226
brain
149
kidney
90
blood vessel
90
vasculature
78
limb
62
bone element
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
Project
2125
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1497
GRCh38
1439
hg19
Lab
1994
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
pericardium
BIOSAMPLE
ASSAY
2191 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
292
61
6
4
3
1
4
liver
167
145
1
3
1
1
1
1
kidney
49
27
64
1
1
heart left ventricle
3
35
18
4
1
1
1
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