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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
314
ChIP-seq
Assay category
314
DNA binding
Target of assay
240
transcription factor
88
histone
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
538
February, 2021
314
November, 2017
214
August, 2021
210
May, 2020
201
August, 2017
162
July, 2018
152
May, 2021
101
May, 2022
98
February, 2023
98
July, 2019
74
November, 2018
68
October, 2019
61
December, 2017
56
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
43
March, 2020
35
December, 2018
27
September, 2018
26
May, 2019
24
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
20
November, 2019
9
April, 2020
8
December, 2019
8
November, 2020
6
June, 2019
6
September, 2017
5
January, 2018
5
March, 2023
5
May, 2024
4
August, 2018
4
May, 2023
4
October, 2022
3
October, 2017
2
June, 2018
1
March, 2019
Available data
313
bam
302
fastq
255
bigWig
235
bed narrowPeak
235
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
Organism
314
Homo sapiens
Biosample type
296
cell line
12
tissue
6
primary cell
Organ
296
liver
18
brain
4
epithelium
4
vasculature
2
blood vessel
Project
314
AMP
Genome assembly (visualization)
253
hg19
205
GRCh38
Lab
314
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
inconsistent control run_type
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ChIP-seq
cell line
HepG2
296
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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