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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
25
total RNA-seq
4
pCHi-C
3
Hi-C
Assay category
172
DNA binding
25
Transcription
DNA accessibility
3
3D chromatin structure
Target of assay
136
histone
136
histone modification
119
narrow histone mark
36
control
17
broad histone mark
Date released
520
February, 2021
368
August, 2017
234
August, 2021
204
October, 2019
196
May, 2020
162
July, 2018
140
May, 2021
98
July, 2019
94
November, 2017
59
September, 2018
49
April, 2018
41
March, 2020
40
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
27
May, 2022
24
February, 2020
22
May, 2019
20
November, 2019
16
April, 2019
15
November, 2018
12
February, 2023
9
January, 2019
9
October, 2017
8
December, 2019
8
November, 2020
6
September, 2017
5
December, 2018
5
January, 2018
4
August, 2018
4
June, 2019
4
May, 2023
2
June, 2018
1
March, 2019
1
October, 2022
Available data
218
bam
179
bigWig
165
bed narrowPeak
bigBed narrowPeak
49
tagAlign
11
tsv
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
Organism
204
Homo sapiens
Biosample type
178
tissue
17
primary cell
9
cell line
Organ
83
brain
21
limb
20
eye
18
epithelium
15
nerve
14
kidney
13
blood vessel
13
vasculature
8
heart
8
pancreas
8
vein
6
liver
5
artery
4
gonad
4
ovary
1
connective tissue
1
lymph node
1
pituitary gland
Project
204
AMP
Genome assembly (visualization)
125
hg19
121
GRCh38
Lab
204
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
4
tibial nerve
11
4
heart
5
2
1
brain
5
1
liver
5
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
7
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
7
1
glomerular visceral epithelial cell
1
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