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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
242
total RNA-seq
180
single cell RNA-seq
47
WGBS
16
pCHi-C
10
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
Assay category
424
Transcription
DNA accessibility
254
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
220
histone
220
histone modification
114
broad histone mark
106
narrow histone mark
30
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
192
May, 2021
76
February, 2023
74
May, 2022
59
September, 2018
56
September, 2020
54
August, 2017
43
April, 2018
43
May, 2020
42
July, 2018
28
July, 2019
27
October, 2019
20
February, 2021
9
June, 2019
9
November, 2017
5
December, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
473
bigWig
458
bam
342
fastq
246
tsv
206
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
37
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
760
Homo sapiens
Biosample type
2217
tissue
760
primary cell
556
cell line
246
in vitro differentiated cells
7
stem cell
Organ
307
epithelium
270
pancreas
30
vasculature
26
blood vessel
19
connective tissue
19
vein
17
kidney
16
brain
11
liver
5
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
341
AMP
227
HPAP
191
T1D
1
ITG
Genome assembly (visualization)
487
hg19
428
GRCh38
Lab
306
AMP-T2D consortium
227
Klaus Kaestner, Upenn
226
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
organ_slims!
pericardium
BIOSAMPLE
ASSAY
760 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
pancreatic alpha cell
13
52
12
31
1
Langerhans cell
85
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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