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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
685
ChIP-seq
165
single cell RNA-seq
23
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1114
Transcription
685
DNA binding
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
552
histone
552
histone modification
294
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
453
February, 2021
220
October, 2019
193
May, 2020
159
August, 2021
118
July, 2018
115
May, 2019
108
August, 2017
82
November, 2017
80
April, 2019
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
36
March, 2020
24
February, 2020
21
May, 2022
20
November, 2019
16
October, 2018
14
February, 2023
April, 2020
6
October, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1660
bam
1546
bigWig
1072
tsv
593
bed narrowPeak
377
bigBed narrowPeak
fastq
238
tagAlign
72
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1872
Homo sapiens
Biosample type
1873
tissue
419
primary cell
131
cell line
110
in vitro differentiated cells
5
stem cell
Organ
499
connective tissue
440
adipose tissue
257
liver
247
heart
239
pancreas
221
brain
149
kidney
90
blood vessel
90
vasculature
78
limb
62
bone element
46
musculature of body
40
nerve
32
artery
25
eye
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
Project
1816
AMP
47
KPMP
10
T1D
Genome assembly (visualization)
1262
GRCh38
1210
hg19
Lab
1691
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
inconsistent ontology term
7
audit script error
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
month_released!
April, 2020
BIOSAMPLE
ASSAY
1873 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
RNA microarray
snDrop-seq
tissue
adipose tissue
382
1
liver
167
78
1
1
2
1
1
islet of Langerhans
195
43
4
3
1
4
kidney
49
27
64
1
1
heart left ventricle
3
35
18
1
4
1
1
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