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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
3
ChIP-seq
Assay category
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
74
May, 2022
19
September, 2020
3
November, 2017
Available data
2810
bam
2638
bigWig
1443
tsv
1278
bed narrowPeak
1245
fastq
781
bigBed narrowPeak
395
tagAlign
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
73
txt
64
bed bed3+
34
bed bedMethyl
34
bigBed bedMethyl
18
hic
16
bedpe bed3+
8
csv
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
96
Homo sapiens
Biosample type
93
primary cell
3
cell line
Organ
41
epithelium
41
pancreas
3
liver
Project
93
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
93
Klaus Kaestner, Upenn
3
AMP-T2D consortium
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
96 results
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single cell RNA-seq
WGBS
ChIP-seq
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
HepG2
3
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