Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
2
WGBS
1
pCHi-C
Assay category
20
DNA binding
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
8
November, 2018
7
December, 2018
7
January, 2019
1
March, 2020
Available data
22
bam
22
fastq
14
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
23
Homo sapiens
Biosample type
23
tissue
Organ
762
liver
711
pancreas
635
connective tissue
483
adipose tissue
epithelium
311
heart
246
brain
178
vasculature
174
blood vessel
108
kidney
92
artery
78
limb
63
bone element
60
blood
60
bodily fluid
53
musculature of body
40
nerve
31
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
Project
23
AMP
Genome assembly (visualization)
14
GRCh38
12
hg19
Lab
23
AMP-T2D consortium
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
organ_slims!
epithelium
BIOSAMPLE
ASSAY
23 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
WGBS
pCHi-C
tissue
spleen
20
2
1
Download