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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
22
total RNA-seq
9
Hi-C
7
RRBS
6
small RNA-seq
4
single cell RNA-seq
3
pCHi-C
1
WGBS
Assay category
247
DNA binding
DNA accessibility
32
Transcription
9
3D chromatin structure
8
DNA methylation
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
36
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
83
October, 2019
35
May, 2019
26
August, 2017
26
July, 2019
15
October, 2017
13
February, 2020
7
March, 2020
2
June, 2019
1
May, 2022
Available data
222
bam
212
bigWig
188
bed narrowPeak
133
tagAlign
101
bigBed narrowPeak
34
tsv
28
bed broadPeak
20
fastq
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bedpe bed3+
2
hic
1
tagAlign bed3+
Organism
299
Homo sapiens
Biosample type
278
tissue
21
primary cell
Organ
762
liver
711
pancreas
635
connective tissue
483
adipose tissue
331
epithelium
311
heart
246
brain
178
vasculature
174
blood vessel
169
kidney
92
artery
78
limb
63
bone element
60
blood
60
bodily fluid
53
musculature of body
40
nerve
31
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
Project
299
AMP
Genome assembly (visualization)
194
GRCh38
169
hg19
Lab
299
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
299 results
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ChIP-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
single cell RNA-seq
pCHi-C
WGBS
tissue
skeletal muscle tissue
22
1
4
1
1
layer of hippocampus
23
brain
20
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
skeletal muscle cell
2
1
cerebellar granule cell
2
+ See 3 more…
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