Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
188
total RNA-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
524
DNA binding
192
Transcription
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
52
August, 2017
45
November, 2018
35
August, 2021
20
May, 2022
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
Available data
644
bam
567
bigWig
438
fastq
385
bed narrowPeak
329
bigBed narrowPeak
173
tsv
86
tagAlign
54
bed broadPeak
54
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
733
Homo sapiens
Biosample type
380
cell line
328
tissue
14
in vitro differentiated cells
11
primary cell
Organ
759
pancreas
733
liver
647
connective tissue
483
adipose tissue
372
epithelium
308
heart
164
brain
164
kidney
147
bone element
137
vasculature
133
blood vessel
69
artery
61
musculature of body
50
blood
50
bodily fluid
37
embryo
23
spleen
15
limb
10
lung
9
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
733
AMP
Genome assembly (visualization)
568
hg19
496
GRCh38
Lab
682
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
25
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent replicate
month_released!
October, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
733 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
2
2
2
1
tissue
liver
138
166
3
1
1
1
1
1
right lobe of liver
10
3
1
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
Download