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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
1
RRBS
1
single cell RNA-seq
1
total RNA-seq
Assay category
10
DNA binding
DNA accessibility
2
Transcription
1
DNA methylation
Target of assay
4
control
4
histone
4
histone modification
4
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
4
December, 2017
3
June, 2019
3
May, 2019
1
July, 2018
1
July, 2019
1
May, 2021
Available data
12
bam
8
bigWig
6
bed narrowPeak
5
fastq
4
bigBed narrowPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
cell line
8
primary cell
5
in vitro differentiated cells
Organ
bone element
15
connective tissue
13
epithelium
8
musculature of body
7
kidney
6
embryo
5
heart
5
pancreas
3
brain
1
stomach
1
urinary bladder
Project
13
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
assay_slims!
DNA accessibility
biosample_type!
cell line
organ_slims!
bone element
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
RRBS
single cell RNA-seq
total RNA-seq
primary cell
epithelial cell of proximal tubule
3
1
kidney epithelial cell
3
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
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