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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
4
ChIP-seq
1
pCHi-C
Assay category
67
Transcription
DNA accessibility
4
DNA binding
Target of assay
3
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
72
May, 2021
22
June, 2019
19
October, 2019
15
March, 2020
15
November, 2019
6
July, 2018
6
November, 2020
4
May, 2020
3
August, 2021
3
May, 2019
2
December, 2019
2
February, 2023
2
July, 2019
1
February, 2020
1
June, 2018
Available data
71
bam
71
bigWig
67
tsv
4
bed narrowPeak
3
tagAlign
Organism
72
Homo sapiens
Biosample type
66
in vitro differentiated cells
5
cell line
1
primary cell
Organ
6
epithelium
5
pancreas
embryo
Project
70
AMP
2
T1D
Genome assembly (visualization)
71
GRCh38
71
hg19
Lab
71
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
72
inconsistent ontology term
assay_slims!
DNA accessibility
files.file_type!
vcf
organ_slims!
embryo
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ChIP-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiomyocytes (cardiac muscle cell)
1
intermediate cardiomyocytes
1
intermediate endothelial cell
1
intermediate smooth muscle cell
1
cell line
EndoC_BH1
4
1
primary cell
naive B cel
1
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