Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
949
total RNA-seq
536
ChIP-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
3
snDrop-seq
Assay category
1078
Transcription
536
DNA binding
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
585
histone modification
584
histone
narrow histone mark
279
broad histone mark
185
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
537
February, 2021
210
August, 2017
166
May, 2020
120
July, 2018
99
August, 2021
93
October, 2019
82
May, 2019
69
July, 2019
63
October, 2018
57
April, 2019
54
November, 2017
46
December, 2017
38
May, 2021
36
March, 2020
25
February, 2020
20
November, 2019
16
November, 2018
10
October, 2017
9
February, 2023
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
3
December, 2019
1
May, 2022
1
May, 2023
Available data
1392
bam
1234
bigWig
1074
tsv
302
bed narrowPeak
280
fastq
267
bigBed narrowPeak
125
tagAlign
93
txt
25
bed bedMethyl
25
bigBed bedMethyl
19
bed broadPeak
11
bed bed3+
9
bedpe bed3+
9
hic
6
csv
Organism
1773
Homo sapiens
Biosample type
1779
tissue
555
cell line
257
in vitro differentiated cells
255
primary cell
7
stem cell
Organ
514
connective tissue
456
adipose tissue
365
pancreas
272
liver
184
heart
146
bone element
116
brain
72
blood vessel
72
vasculature
63
limb
39
musculature of body
32
nerve
31
kidney
26
artery
23
eye
21
spleen
4
skeleton
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1777
AMP
2
T1D
Genome assembly (visualization)
1227
GRCh38
1205
hg19
Lab
1779
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
25
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
audit.NOT_COMPLIANT.category!
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
1779 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snDrop-seq
tissue
adipose tissue
382
1
3
1
islet of Langerhans
280
27
6
4
1
1
liver
147
103
1
3
1
1
1
1
bone element
84
bone tissue
58
+ See 88 more…
See all biosamples
Download