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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
total RNA-seq
31
ChIP-seq
14
single cell RNA-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
88
Transcription
DNA accessibility
31
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
607
February, 2021
353
May, 2021
325
November, 2017
311
August, 2017
234
October, 2019
218
May, 2020
168
July, 2018
133
August, 2021
101
May, 2022
99
February, 2023
82
May, 2019
76
July, 2019
72
December, 2017
69
November, 2018
56
September, 2020
53
March, 2020
49
April, 2018
47
October, 2018
47
September, 2023
33
November, 2019
31
December, 2018
31
February, 2018
27
September, 2018
26
January, 2019
22
February, 2020
20
June, 2019
19
April, 2019
10
December, 2019
9
April, 2020
9
November, 2020
8
October, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
57
txt
45
bigWig
31
bam
31
tsv
30
bed narrowPeak
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
132
Homo sapiens
Biosample type
67
tissue
40
cell line
23
in vitro differentiated cells
3
primary cell
Organ
heart
60
kidney
30
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
3
connective tissue
2
artery
1
adipose tissue
Project
133
AMP
Genome assembly (visualization)
48
hg19
31
GRCh38
Lab
58
Katalin Susztak, Upenn
41
AMP-T2D consortium
32
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA accessibility
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
target.investigated_as!
control
BIOSAMPLE
ASSAY
133 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
49
8
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
14
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
14
adipocyte
1
osteoblast
1
primary cell
hepatocyte
3
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