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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
41
single cell RNA-seq
16
total RNA-seq
7
WGBS
Assay category
65
DNA binding
57
Transcription
DNA accessibility
7
DNA methylation
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
666
February, 2021
385
November, 2017
384
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
82
December, 2017
80
April, 2019
75
October, 2018
73
November, 2018
59
September, 2018
56
March, 2020
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
4
August, 2018
4
January, 2018
4
May, 2023
4
October, 2022
3
June, 2018
3
March, 2023
1
March, 2019
Available data
111
fastq
72
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
19
zippedFastqFolder
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
129
Homo sapiens
Biosample type
57
primary cell
56
cell line
16
tissue
Organ
45
liver
20
pancreas
16
epithelium
15
blood
15
bodily fluid
8
spleen
Project
73
AMP
56
HPAP
Genome assembly (visualization)
65
GRCh38
56
hg19
Lab
73
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control read length
biosample_type!
stem cell
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
primary cell
Langerhans cell
40
pancreatic alpha cell
15
pancreatic beta cell
1
pancreatic cell
1
cell line
HepG2
40
1
GM12878
15
tissue
spleen
6
2
liver
4
body of pancreas
2
pancreas
2
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