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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
14
total RNA-seq
1
GRO-seq
Assay category
19
DNA binding
14
Transcription
Target of assay
10
histone
10
histone modification
7
control
7
narrow histone mark
3
broad histone mark
2
transcription factor
Date released
13
February, 2018
10
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
33
bam
26
bigWig
24
fastq
14
tsv
11
bed narrowPeak
2
bed bed3+
Organism
34
Homo sapiens
Biosample type
26
in vitro differentiated cells
8
cell line
Organ
755
pancreas
678
liver
634
connective tissue
478
adipose tissue
388
epithelium
305
heart
246
brain
188
kidney
173
vasculature
170
blood vessel
147
bone element
91
artery
78
limb
61
musculature of body
40
nerve
38
blood
38
bodily fluid
34
embryo
28
eye
19
vein
16
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
1
hg18
Lab
34
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
34 results
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Clear Filters
ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
16
4
1
Hepatic endoderm
3
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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