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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
65
ChIP-seq
7
WGBS
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
single cell RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
DNA accessibility
95
Transcription
65
DNA binding
7
DNA methylation
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
6
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
666
February, 2021
385
November, 2017
384
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
83
December, 2017
80
April, 2019
75
October, 2018
73
November, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
149
fastq
72
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
4
txt
1
csv
Organism
172
Homo sapiens
Biosample type
77
primary cell
62
cell line
30
tissue
4
in vitro differentiated cells
Organ
47
pancreas
45
liver
40
epithelium
15
blood
15
bodily fluid
8
spleen
4
bone element
4
connective tissue
4
eye
4
skeleton
1
heart
Project
87
AMP
76
HPAP
10
T1D
Genome assembly (visualization)
65
GRCh38
56
hg19
Lab
87
AMP-T2D consortium
76
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control read length
month_released!
January, 2019
BIOSAMPLE
ASSAY
173 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
CRISPR genome editing followed by DNA sequencing
HiChIP
single cell RNA-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
pancreatic cell
1
cell line
HepG2
40
1
GM12878
15
EndoC_BH1
3
2
1
tissue
spleen
6
2
islet of Langerhans
5
liver
4
body of pancreas
2
pancreas
2
+ See 7 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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