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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
73
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
399
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
480
Homo sapiens
Biosample type
478
tissue
2
primary cell
1
in vitro differentiated cells
Organ
772
pancreas
748
liver
648
connective tissue
481
adipose tissue
401
epithelium
313
heart
237
brain
191
kidney
175
vasculature
171
blood vessel
147
bone element
90
artery
75
limb
59
musculature of body
42
blood
42
bodily fluid
39
nerve
37
embryo
28
eye
19
vein
16
spleen
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
481
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
481
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_slims!
DNA accessibility
audit.WARNING.category!
inconsistent control run_type
month_released!
February, 2020
January, 2019
BIOSAMPLE
ASSAY
481 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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