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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
47
WGBS
15
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
181
Transcription
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
81
February, 2023
74
May, 2022
56
September, 2020
18
February, 2021
15
May, 2021
5
March, 2023
3
October, 2022
Available data
bam
184
bigWig
132
fastq
104
tsv
93
zippedFastqFolder
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
248
Homo sapiens
Biosample type
243
primary cell
tissue
7
cell line
2
stem cell
Organ
103
epithelium
103
pancreas
1
bone element
1
bone marrow
connective tissue
Project
227
HPAP
AMP
20
T1D
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
227
Klaus Kaestner, Upenn
20
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
award.project!
AMP
biosample_type!
tissue
files.file_type!
bam
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
CD4-positive, alpha-beta T cell
2
+ See 15 more…
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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