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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
141
single cell RNA-seq
86
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
287
Transcription
DNA accessibility
86
DNA binding
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
49
February, 2023
47
September, 2023
45
May, 2020
40
September, 2020
33
May, 2022
12
February, 2021
9
April, 2020
5
March, 2023
4
March, 2020
Available data
182
bam
182
bigWig
96
tsv
86
bed narrowPeak
84
tagAlign
73
fastq
52
zippedFastqFolder
1
hic
Organism
392
Homo sapiens
Biosample type
321
primary cell
66
tissue
7
cell line
2
stem cell
Organ
116
pancreas
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
211
T1D
124
HPAP
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
183
GRCh38
182
hg19
Lab
207
Kyle Gaulton, UCSD
124
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
assay_slims!
DNA accessibility
award.project!
AMP
organ_slims!
epithelium
nerve
BIOSAMPLE
ASSAY
396 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
exocrine cell
39
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
+ See 33 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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