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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
17
pCHi-C
10
RRBS
7
Hi-C
5
total RNA-seq
2
single cell RNA-seq
1
DNAme array
Assay category
279
DNA binding
DNA accessibility
11
DNA methylation
7
3D chromatin structure
7
Transcription
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
141
May, 2021
54
August, 2017
33
September, 2018
31
June, 2019
25
October, 2019
13
July, 2019
9
November, 2017
5
May, 2019
4
August, 2021
2
May, 2020
1
February, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
505
bigWig
495
bam
tsv
226
bed narrowPeak
217
fastq
100
tagAlign
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bedpe bed3+
Organism
321
Homo sapiens
Biosample type
1232
tissue
513
cell line
321
primary cell
in vitro differentiated cells
6
stem cell
Organ
102
epithelium
70
pancreas
28
vasculature
24
blood vessel
19
vein
18
kidney
16
connective tissue
13
brain
11
musculature of body
6
heart
6
liver
4
eye
1
bone element
1
bone marrow
Project
HPAP
220
AMP
100
T1D
1
ITG
Genome assembly (visualization)
266
hg19
208
GRCh38
Lab
185
AMP-T2D consortium
135
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
award.project!
HPAP
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
BIOSAMPLE
ASSAY
321 results
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ChIP-seq
pCHi-C
RRBS
Hi-C
total RNA-seq
single cell RNA-seq
DNAme array
primary cell
monocyte
85
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
2
skeletal muscle myoblast
15
1
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