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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
100
ChIP-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
100
DNA binding
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
35
August, 2021
25
August, 2017
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
3
March, 2020
2
February, 2021
1
February, 2020
Available data
673
bam
596
bigWig
fastq
413
bed narrowPeak
352
bigBed narrowPeak
174
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
301
Homo sapiens
Biosample type
257
tissue
33
cell line
11
primary cell
Organ
553
connective tissue
442
adipose tissue
319
pancreas
316
heart
301
liver
231
brain
kidney
172
vasculature
171
blood vessel
147
bone element
132
epithelium
92
artery
78
limb
59
musculature of body
40
nerve
29
eye
19
vein
10
embryo
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
301
AMP
Genome assembly (visualization)
211
hg19
184
GRCh38
Lab
250
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
assay_slims!
DNA accessibility
award.project!
HPAP
files.file_type!
fastq
organ_slims!
kidney
BIOSAMPLE
ASSAY
301 results
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total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
1
2
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
9
18
1
2
2
1
primary cell
hepatocyte
5
4
1
endothelial cell of hepatic sinusoid
1
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