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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
17
ChIP-seq
2
Hi-C
Assay category
62
Transcription
17
DNA binding
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
142
February, 2021
18
October, 2019
4
February, 2023
1
March, 2020
Available data
88
txt
75
bam
70
bigWig
58
tsv
10
bed narrowPeak
10
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
Organism
165
Homo sapiens
Biosample type
146
tissue
19
primary cell
Organ
762
liver
760
pancreas
649
connective tissue
483
adipose tissue
397
epithelium
316
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
146
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
165
AMP
T1D
Genome assembly (visualization)
72
hg19
68
GRCh38
Lab
165
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
1
audit script error
assay_slims!
DNA accessibility
award.project!
T1D
award.project!!
T1D
BIOSAMPLE
ASSAY
165 results
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RNA microarray
total RNA-seq
ChIP-seq
Hi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
ilium
1
ischium
1
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primary cell
endothelial cell of umbilical vein
17
2
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