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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
905
ChIP-seq
124
single cell RNA-seq
86
RNA microarray
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
WGBS
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
1162
Transcription
905
DNA binding
DNA accessibility
16
3D chromatin structure
13
DNA methylation
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
274
August, 2017
222
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
55
July, 2019
48
December, 2017
40
May, 2024
39
May, 2021
34
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
February, 2023
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
2
December, 2019
1
March, 2019
Available data
1660
bam
1546
bigWig
1072
tsv
593
bed narrowPeak
377
bigBed narrowPeak
336
fastq
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2205
Homo sapiens
Biosample type
2213
tissue
564
cell line
327
in vitro differentiated cells
160
primary cell
8
stem cell
Organ
537
connective tissue
478
adipose tissue
408
pancreas
335
liver
240
heart
232
brain
146
bone element
101
kidney
89
blood vessel
89
vasculature
77
limb
45
musculature of body
40
nerve
32
artery
25
eye
21
spleen
5
gonad
5
ovary
4
skeleton
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2213
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1506
GRCh38
1456
hg19
Lab
2078
AMP-T2D consortium
61
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
7
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
6
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA accessibility
files.file_type!
bigBed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2213 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
small RNA-seq
WGBS
MeRIP-seq
snDrop-seq
RRBS
tissue
adipose tissue
382
2
1
1
islet of Langerhans
285
69
6
4
3
4
liver
167
145
1
1
1
1
3
kidney
49
27
17
1
bone element
84
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